GSEA的使用

时间:2024-01-21 14:31:33

下载GSEA

网址:http://software.broadinstitute.org/gsea/downloads.jsp

gsea2-2.2.2.jar

c2.cp.kegg.v5.1.symbols.gmt

P53.cls

P53_hgu95av2.gct

HG_U95Av2.chip

运行示例:

java -cp gsea2-2.2.2.jar -Xmx1024m xtools.gsea.Gsea -gmx c2.cp.kegg.v5.1.symbols.gmt -res P53_hgu95av2.gct -cls P53.cls -chip HG_U95Av2.chip -out result -rpt_label p53_exemple

OK 结果在result文件夹里面

详细参数解释:http://software.broadinstitute.org/gsea/doc/GSEAUserGuideTEXT.htm#_Other_Ways_to