下载GSEA
网址:http://software.broadinstitute.org/gsea/downloads.jsp
gsea2-2.2.2.jar
c2.cp.kegg.v5.1.symbols.gmt
P53.cls
P53_hgu95av2.gct
HG_U95Av2.chip
运行示例:
java -cp gsea2-2.2.2.jar -Xmx1024m xtools.gsea.Gsea -gmx c2.cp.kegg.v5.1.symbols.gmt -res P53_hgu95av2.gct -cls P53.cls -chip HG_U95Av2.chip -out result -rpt_label p53_exemple
OK 结果在result文件夹里面
详细参数解释:http://software.broadinstitute.org/gsea/doc/GSEAUserGuideTEXT.htm#_Other_Ways_to