文件名称：matlab求平均值的代码男-DTI:SBDTI管道
文件大小：43KB
文件格式：ZIP
更新时间：2024-07-06 02:34:09
系统开源
matlab求求的代码男贸工部 SB DTI 管道 预处理 创建 DTI 文件夹并将 dicoms 转换为 NIfti # use foreach n (SB002_fu2 SB018_fu2 SB019_fu2…) from line 3 of subjects (all subjects) cd /danl/SB/ ${n} /anatomical/PING_30DIR_LONGTR_4/ if ( ! -d DTI) then mkdir DTI/ dcm2nii -o ./DTI -r N DICOM for i in $( ls ) ; do dcm2nii -p y -f y ${i} / * ; done ; 大脑提取 - 提取 b0 创建掩码 fslroi * .nii.gz ${n} _b0_AP 0 1 bet ${n} _b0_AP ${n} _brain -m -f 0.3 # cannot run topup becuase only 1 b0 image 运行涡流 # IF not running on cluster - I did not do thi
【文件预览】：
DTI-master
----scripts()
--------motion_assess()
--------autoptx()
--------tbss_scripts()
--------makingCovariateFiles01.28.2019.Rmd(6KB)
----tbssVisualizationLongitudinal.Rmd(847B)
----tractography(655B)
----preproc()
--------tractList.txt(36B)
--------subjectList(2KB)
--------subjectList.txt(2KB)
----eddy(376B)
----habanero()
--------6.1randomise_cross(332B)
--------0.1prepare_tbss_folder(710B)
--------0.2prepare_bedpostx_folder(1KB)
--------6.1b_randomise_cross_AD(332B)
--------2.1tbss_2_reg(215B)
--------0.3prepare_autoptx_folders(619B)
--------6.2b_randomise_cross_Interaction_AD(350B)
--------1.3autoPtx_1(294B)
--------6.2randomise_cross_Interaction(348B)
--------6.2b_randomise_cross_Interaction_MD(350B)
--------6.2b_randomise_cross_Interaction_RD(350B)
--------6.1b_randomise_cross_MD(335B)
--------2.3autoPtx_2(208B)
--------4.1tbss_4_prestats(203B)
--------5.1b_tbss_non_FA_long(235B)
--------0.1b_prepare_tbss_folders_nonFA_long(2KB)
--------3.2registration_BEDPOSTX_eddy(9KB)
--------6.1b_randomise_cross_RD(332B)
--------1.1tbss_1_preproc(224B)
--------5.1tbss_non_FA(230B)
--------0.1perpare_tbss_folders_long(722B)
--------1.1b_tbss_1_preproc_long(203B)
--------0.1b_prepare_tbss_folders_nonFA(2KB)
--------3.1tbss_3_postreg(201B)
--------2.1b_tbss_2_reg_long(195B)
--------2.2registration_prep(2KB)
--------4.2probtrackxAmygSeed(2KB)
--------5.2combineRD(341B)
--------4.1b_tbss_4_prestats_long(192B)
--------0.0eddy_opemp_batch.sh(456B)
--------1.2bedpostx.sh(197B)
--------3.1b_tbss_3_postreg_long(202B)
----mastersDTI.Rproj(205B)
----tractList.txt(36B)
----6.1extractAllValues.sh(11KB)
----README.md(17KB)
----7.thresholding_randomise.sh(12KB)
----subjects(11KB)
----subjectList.txt(2KB)
----6.2randomise.cross_Interaction(347B)
----Convert_to_NIFTI(419B)
----subjectListLong.txt(2KB)
----.gitignore(40B)
----6.2extractingAllValues.R(5KB)
----subjectListCross.txt(1KB)
----Seed_based_tractography(605B)