文件名称：SSPACE for scaffolding
文件大小：2.52MB
文件格式：ZIP
更新时间：2016-06-23 20:29:49
SSPACE scaffold assembly RNAseq
The main featues are; * Inputs are simple FASTA contig sequences as well as (multiple) FASTA/FASTQ paired-read data * High-quality scaffolds in a short runtime and limited memory requirements * High reduction of the amount of contigs stored into scaffolds and high N50 value * Multiple library input of both paired-end and/or mate pair datasets * Possible contig extension of unmapped sequence reads * Easy interpretation of the final scaffolds * Visualization of the final scaffolds using GraphViz
【文件预览】：
SSPACE-BASIC-2.0_linux-x86_64
----bin()
--------ExtendOrFormatContigs.pl(17KB)
--------PairingAndScaffolding.pl(41KB)
--------readLibFiles.pl(8KB)
----example()
--------contigs_abyss.fasta(4.36MB)
--------libraries.txt(52B)
----tools()
--------qseq2fasta.pl(482B)
--------TQS.py(8KB)
--------qseq2fastq.pl(382B)
--------TRIMMING_PAIRED_READS.README(3KB)
--------fq_all2std.pl(7KB)
--------TQSfastq.py(5KB)
--------TQSexport.py(5KB)
--------estimate_insert_size.pl(8KB)
--------TQS.readme(2KB)
--------sam_bam2tab.pl(5KB)
----benchmark_SSPACE_Basic_v2-0_25juli.doc(33KB)
----F132-01 SSPACE_Basic_User_Manual_v2.0.pdf(92KB)
----README(34KB)
----dotlib()
--------DotLib.pm(5KB)
----F132-02 SSPACE_Basic_Tutorial_v2.0.pdf(92KB)
----bowtie()
--------bowtie-build(318KB)
--------VERSION(6B)
--------bowtie-build-debug(2.48MB)
--------bowtie(743KB)
----SSPACE_Basic_v2.0.pl(31KB)