特征提取k_word

时间:2022-05-22 14:48:01

1) 若直接以20种氨基酸统计k_word: (以ZD98数据集为例)

k Dimension
2 400
3 6490
4 22265

  维数太大不适用构造特征向量

考虑氨基酸约化后特征提取

约化方案:

Classification Abbreviation Abbreviation
Strongly hydrophilic or polar L R, D, E, N, Q, K, H
Strongly hydrophobic B L, I, V, A, M, F
Weakly hydrophilic or weakly hydrophobic W S, T, Y, W
Proline P P
Glycine G G
Cysteine C C

约化后的特征

k dimension
2 36
3 211
4 1071
5 3732
6 8698
7 14620