I have been trying to install rpy2 on Mac OS X 10.9, but I have not been able to do so. I think there is a problem with the R shared library, but I read that R is installed with the shared library option as default. Any help would be very appreciated!
我一直在尝试在Mac OS X 10.9上安装rpy2，但是我还没有这样做。我认为R共享库有一个问题，但是我读到R是默认安装的共享库选项。非常感谢您的帮助!
This is the log:
这是日志:
Downloading from URL https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.9.tar.gz#md5=86851a56f637e7b87709eb2b91dc5075 (from https://pypi.python.org/simple/rpy2/)
Running setup.py (path:/private/tmp/pip_build_root/rpy2/setup.py) egg_info for package rpy2
running egg_info
creating pip-egg-info/rpy2.egg-info
writing dependency_links to pip-egg-info/rpy2.egg-info/dependency_links.txt
writing pip-egg-info/rpy2.egg-info/PKG-INFO
writing top-level names to pip-egg-info/rpy2.egg-info/top_level.txt
writing manifest file 'pip-egg-info/rpy2.egg-info/SOURCES.txt'
warning: manifest_maker: standard file '-c' not found
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --ldflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --cppflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config LAPACK_LIBS
returned an empty string.
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config BLAS_LIBS
returned an empty string.
Configuration for R as a library:
include_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/include',)
libraries: ()
library_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/lib',)
extra_link_args: ('-F/opt/local/Library/Frameworks/R.framework/..', '-framework R')
# OSX-specific (included in extra_link_args)
framework_dirs: ('-F/opt/local/Library/Frameworks/R.framework/..',)
frameworks: ('-framework R',)
reading manifest file 'pip-egg-info/rpy2.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*patch*' found anywhere in distribution
warning: no previously-included files matching '*diff*' found anywhere in distribution
warning: no previously-included files matching '.hg' found anywhere in distribution
no previously-included directories found matching 'dist'
writing manifest file 'pip-egg-info/rpy2.egg-info/SOURCES.txt'
Source in /private/tmp/pip_build_root/rpy2 has version 2.3.9, which satisfies requirement rpy2
Installing collected packages: rpy2
Running setup.py install for rpy2
Running command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-E3rnYf-record/install-record.txt --single-version-externally-managed --compile
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-intel-2.7
creating build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/rpy_classic.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/tests.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/tests_rpy_classic.py -> build/lib.macosx-10.9-intel-2.7/rpy2
creating build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/container.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/functional.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/indexing.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
creating build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_container.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_functional.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_indexing.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/rinterface
copying ./rpy/rinterface/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface
creating build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Device.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/constants.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/conversion.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/environments.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/functions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/help.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/language.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/methods.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/numpy2ri.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/packages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/pandas2ri.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/robject.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/vectors.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testArray.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFormula.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFunction.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testHelp.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testLanguage.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testMethods.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPackages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRObject.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRobjects.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testVector.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/ggplot2.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/grid.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/ipython.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/packages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/process_revents.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
creating build/lib.macosx-10.9-intel-2.7/rpy2/interactive/tests
copying ./rpy/interactive/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive/tests
running build_ext
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --ldflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --cppflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config LAPACK_LIBS
returned an empty string.
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config BLAS_LIBS
returned an empty string.
Configuration for R as a library:
include_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/include',)
libraries: ()
library_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/lib',)
extra_link_args: ('-F/opt/local/Library/Frameworks/R.framework/..', '-framework R')
# OSX-specific (included in extra_link_args)
framework_dirs: ('-F/opt/local/Library/Frameworks/R.framework/..',)
frameworks: ('-framework R',)
building 'rpy2.rinterface._rinterface' extension
creating build/temp.macosx-10.9-intel-2.7
creating build/temp.macosx-10.9-intel-2.7/rpy
creating build/temp.macosx-10.9-intel-2.7/rpy/rinterface
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/opt/local/Library/Frameworks/R.framework/Resources/include -c ./rpy/rinterface/_rinterface.c -o build/temp.macosx-10.9-intel-2.7/./rpy/rinterface/_rinterface.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
Complete output from command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-E3rnYf-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-intel-2.7
creating build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/rpy_classic.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/tests.py -> build/lib.macosx-10.9-intel-2.7/rpy2
copying ./rpy/tests_rpy_classic.py -> build/lib.macosx-10.9-intel-2.7/rpy2
creating build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/container.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/functional.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
copying ./rpy/rlike/indexing.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike
creating build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_container.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_functional.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
copying ./rpy/rlike/tests/test_indexing.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rlike/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/rinterface
copying ./rpy/rinterface/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface
creating build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Device.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.macosx-10.9-intel-2.7/rpy2/rinterface/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/constants.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/conversion.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/environments.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/functions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/help.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/language.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/methods.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/numpy2ri.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/packages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/pandas2ri.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/robject.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
copying ./rpy/robjects/vectors.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testArray.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFormula.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testFunction.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testHelp.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testLanguage.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testMethods.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPackages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRObject.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testRobjects.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
copying ./rpy/robjects/tests/testVector.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/ggplot2.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
copying ./rpy/robjects/lib/grid.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib
creating build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.macosx-10.9-intel-2.7/rpy2/robjects/lib/tests
creating build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/ipython.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/packages.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
copying ./rpy/interactive/process_revents.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive
creating build/lib.macosx-10.9-intel-2.7/rpy2/interactive/tests
copying ./rpy/interactive/tests/__init__.py -> build/lib.macosx-10.9-intel-2.7/rpy2/interactive/tests
running build_ext
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --ldflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config --cppflags
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config LAPACK_LIBS
returned an empty string.
"/opt/local/Library/Frameworks/R.framework/Resources/bin/R" CMD config BLAS_LIBS
returned an empty string.
Configuration for R as a library:
include_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/include',)
libraries: ()
library_dirs: ('/opt/local/Library/Frameworks/R.framework/Resources/lib',)
extra_link_args: ('-F/opt/local/Library/Frameworks/R.framework/..', '-framework R')
# OSX-specific (included in extra_link_args)
framework_dirs: ('-F/opt/local/Library/Frameworks/R.framework/..',)
frameworks: ('-framework R',)
building 'rpy2.rinterface._rinterface' extension
creating build/temp.macosx-10.9-intel-2.7
creating build/temp.macosx-10.9-intel-2.7/rpy
creating build/temp.macosx-10.9-intel-2.7/rpy/rinterface
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/opt/local/Library/Frameworks/R.framework/Resources/include -c ./rpy/rinterface/_rinterface.c -o build/temp.macosx-10.9-intel-2.7/./rpy/rinterface/_rinterface.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
----------------------------------------
Cleaning up...
Removing temporary dir /private/tmp/pip_build_root...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-E3rnYf-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /private/tmp/pip_build_root/rpy2
Exception information:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-1.5.1-py2.7.egg/pip/basecommand.py", line 122, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-1.5.1-py2.7.egg/pip/commands/install.py", line 279, in run
requirement_set.install(install_options, global_options, root=options.root_path)
File "/Library/Python/2.7/site-packages/pip-1.5.1-py2.7.egg/pip/req.py", line 1380, in install
requirement.install(install_options, global_options, *args, **kwargs)
File "/Library/Python/2.7/site-packages/pip-1.5.1-py2.7.egg/pip/req.py", line 699, in install
cwd=self.source_dir, filter_stdout=self._filter_install, show_stdout=False)
File "/Library/Python/2.7/site-packages/pip-1.5.1-py2.7.egg/pip/util.py", line 697, in call_subprocess
% (command_desc, proc.returncode, cwd))
InstallationError: Command /usr/bin/python -c "import setuptools, tokenize;__file__='/private/tmp/pip_build_root/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-E3rnYf-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /private/tmp/pip_build_root/rpy2
2 个解决方案
#1
0
This has to do with the CC compiler (error is right before the Python traceback):
这与CC编译器有关(错误就在Python回溯之前):
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/opt/local/Library/Frameworks/R.framework/Resources/include -c ./rpy/rinterface/_rinterface.c -o build/temp.macosx-10.9-intel-2.7/./rpy/rinterface/_rinterface.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
Can you provide details regarding the origin of the C compiler (OS X dev tools ? elsewhere ?) and of Python (homebrew ? binary install ? other ?). Do you use specific environment variables (e.g. CFLAGS, or other likely to be picked up by clang) ?
您能提供关于C编译器(OS X dev工具)的起源的详细信息吗?还有Python(自制的?二进制安装?其他?)。您是否使用特定的环境变量(例如CFLAGS，或者其他可能被clang选中的变量)?
#2
0
I had the same problem, this worked for me.
我也有同样的问题，这对我很有效。
Just set these environment variables before you build rpy2:
在构建rpy2之前，只需设置这些环境变量:
export CFLAGS=-Qunused-arguments
export CPPFLAGS=-Qunused-arguments
#1
0
This has to do with the CC compiler (error is right before the Python traceback):
这与CC编译器有关(错误就在Python回溯之前):
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -mno-fused-madd -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch i386 -pipe -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/opt/local/Library/Frameworks/R.framework/Resources/include -c ./rpy/rinterface/_rinterface.c -o build/temp.macosx-10.9-intel-2.7/./rpy/rinterface/_rinterface.o
clang: error: unknown argument: '-mno-fused-madd' [-Wunused-command-line-argument-hard-error-in-future]
clang: note: this will be a hard error (cannot be downgraded to a warning) in the future
error: command 'cc' failed with exit status 1
Can you provide details regarding the origin of the C compiler (OS X dev tools ? elsewhere ?) and of Python (homebrew ? binary install ? other ?). Do you use specific environment variables (e.g. CFLAGS, or other likely to be picked up by clang) ?
您能提供关于C编译器(OS X dev工具)的起源的详细信息吗?还有Python(自制的?二进制安装?其他?)。您是否使用特定的环境变量(例如CFLAGS，或者其他可能被clang选中的变量)?
#2
0
I had the same problem, this worked for me.
我也有同样的问题，这对我很有效。
Just set these environment variables before you build rpy2:
在构建rpy2之前，只需设置这些环境变量:
export CFLAGS=-Qunused-arguments
export CPPFLAGS=-Qunused-arguments