【文件属性】:
文件名称:GSE157852_reanalysis
文件大小:22.93MB
文件格式:ZIP
更新时间:2021-03-26 11:19:21
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STAR vs HISAT2 vs Salmon的再分析
1.原始数据和对齐方式
查看
2.从最初的分析变化
-conda环境
-已安装DESeq2 = 1.30.1(而不是1.30.0)
-其他主要软件包与原始分析相同
name : r
channels :
- conda-forge
- bioconda
- defaults
dependencies :
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.35.1=h193b22a_2
- binutils_linux-64=2.35=h67ddf6f_30
- bioconductor-annotationdbi=1.52
【文件预览】:
GSE157852_reanalysis-master
----README.md(9KB)
----log2FoldChange_Difference_SA_ST.Rmd(6KB)
----DE_EnsDb_MeanFoldFDR.Rmd(52KB)
----log2FoldChange_Difference_SA_ST.html(1.3MB)
----DE_EnsDb.Rmd(35KB)
----baseMean_Difference_SA_ST.Rmd(6KB)
----salmon_tpm_count.Rmd(32KB)
----salmon_tpm_count.html(6.64MB)
----DE_EnsDb.html(6.84MB)
----baseMean_Difference_SA_ST.html(1.33MB)
----padj_Difference_SA_ST.html(1.29MB)
----padj_Difference_SA_ST.Rmd(6KB)
----DE_EnsDb_MeanFoldFDR.html(16.61MB)