文件名称：Using_bioperl_for_bioinformatics.pdf
文件大小：108KB
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更新时间：2022-09-06 17:52:27
Using bioperl for bioinformatics
Contents 1 ThisDocument 1 2 BioperlBasics 1 2.1 BioperlSemantics .......................................... 1 2.1.1 BioperlNamespace..................................... 1 2.1.2 Interfaces........................................... 1 3 SequenceAnalysis 2 3.1 SequenceObjects........................................... 2 3.2 SequenceAnnotation......................................... 2 3.3 SequenceInput/Output....................................... 3 4 SequenceDatabases 3 4.1 Bioperldatabaseinterfaces ..................................... 3 4.1.1 LocaldatabasesandIndexfiles............................... 3 4.2 Remotedatabases .......................................... 4 4.3 SQLdatabases............................................ 4 5 SequenceAnalysis:ParsingandRunning 4 5.1 ParsingAnalysis........................................... 4 5.1.1 BLASTparsing........................................ 4 5.2 MultipleSequenceAlignmentParsing ............................... 5 5.2.1 Genepredictionparsing................................... 6 5.3 GeneralizeParsingofAnalysis ................................... 6 5.4 RunningAnalyses .......................................... 7 5.5 BLAST................................................ 7 5.6 ClustalWandTCoffee........................................ 7 6 Summary 7