文件名称：Single-Particle-Reconstruction:单粒子重建
文件大小：6.73MB
文件格式：ZIP
更新时间：2024-04-10 19:59:40
Python
单粒子cryo-EM数据处理 这是与单粒子冷冻EM数据处理有关的一些注意事项。
【文件预览】：
Single-Particle-Reconstruction-master
----20210121Gracios_PnuC-3NR-C8.md(25KB)
----RELION-Conventions & File formats.md(10KB)
----PnuC_3NR_20200304Krios.md(25KB)
----PnuC_3NR_1mMEDTA_20191123TF20.md(2KB)
----CTF_TroubleShooting.md(226B)
----Local Refinement and Mask Creation.md(13KB)
----PnuC_0NR_20200208TF20.md(2KB)
----RELION-Motion correction.md(36B)
----20190429Krios_PnuC_C8_xxx.md(50KB)
----sidH_20191108TF20.md(2KB)
----RELION-File Format-mrc file.md(3KB)
----PnuC_3NR_20191128TF20.md(2KB)
----John Rubinstein.md(104B)
----.github()
--------workflows()
----Helical_reconstruction()
--------How to search helical symmetry.md(310B)
--------How_to_get_power_spectrum_image.md(857B)
--------KL2_20200103TF20-Fulllength_50mM.md(1KB)
--------KL2-Full-dataprocessing.md(899B)
--------KL2_Full-Krios-20200130.md(2KB)
--------KL2_20200110TF20-Fulllength_200mM.md(2KB)
--------Initial Model generation.md(448B)
--------KL2_20191105TF20.md(1KB)
--------How to generate Initial 3D model.md(2KB)
--------Helical_processing.md(94B)
--------KL2_20191130TF20.md(1KB)
--------How to get Z range.md(3KB)
--------KL2_20200110TF20-Fulllength_50mM.md(1KB)
----PnuC_3NR_20190429Krios-102images.md(2KB)
----README.md(117B)
----cryoEM-scripts()
--------How to extract image list from image star file.md(205B)
--------Gautomatch.md(2KB)
--------How to view Subtracted particles.md(385B)
--------How to calculate power spectrum.md(95B)
--------randomly_pick_micrographs.py(1B)
--------make_gctf_mic_star.sh(4KB)
--------How to select micrographs based on Key words.md(287B)
--------dm4_to_mrc.sh(715B)
--------How to determine Initial binarisation threshold for Mask Creation in RELION.md(210B)
--------Print_command.md(590B)
--------How to do fast fourier transform.py(1KB)
--------rename_all.sh(1KB)
--------How to replace line in file with pattern.md(127B)
--------bfactor_plot.md(4KB)
--------bfactor_plot.py(20KB)
--------How to select micrographs based on defocus.md(3KB)
--------How to convert dm3 to mrc files.md(69B)
--------CountParticles.sh(956B)
--------imgstats.sh(998B)
--------How to Generate 3D Map from PDB files.md(547B)
--------select micrographs based on defocus.md(2KB)
--------How to Project 3D model.md(953B)
--------How to extract Particle coordinates from STAR file.md(133B)
--------How to change box size and pixel size.md(2KB)
--------How_to_run_Fast_2D.md(2KB)
--------How to recover files on the Helix Systems.md(337B)
--------How to remove a list of micrographs from 3D Refinement job.md(2KB)
--------How to use multiple reference in RELION Class3D job.md(696B)
--------How to unstack mrcs.md(71B)
--------How to read and write MRC files in Python.md(31KB)
--------How to introduce Groups from Leginon into RELION star file.md(4KB)
--------How to convert defect file.md(851B)
--------How to view and select raw images manually.md(3KB)
----sidH-30_20191105TF20.md(2KB)
----sidH-Apo_20191123TF20.md(2KB)
----Titan_Krios()
--------Config_File_Default_Setting.sh(8KB)
--------Titan login.md(82B)
----RELION-CTF estimation.md(200B)
----PnuC_3NR_20190429Krios.md(4KB)
----RELION-2D classification.md(73B)
----PnuC_3NR_10mMEDTA_20191128TF20.md(2KB)
----RELION-Import.md(616B)
----Gain-reference.md(1KB)
----PnuC_3NR_20200207TF20.md(2KB)
----RELION-Prepare input files.md(10KB)
----PnuC_0NR_C8_20200107Krios.md(9KB)
----bsoft.md(112B)
----PnuC_0NR_20191206TF20.md(5KB)
----Figures()
--------Start a new Selection.png(302KB)
--------SubsetSelection-job009-20190429dataset.png(147KB)
--------Select all below.png(2.3MB)
--------Readme.md(64B)
--------run_data_image-shift-grouped-star.png(456KB)
--------Save STAR.png(2.44MB)
--------Leginon_Image_Shift_Information.png(471KB)
--------Saved terminal.png(200KB)
--------SubsetSelection-job007-20190429dataset.png(112KB)
--------Image_shift_cluster result pdf.png(384KB)
--------Fig 1 High level flowchart of RELION.jpeg(80KB)
----Pixel size on TF20 and Titan Krios(488B)