文件名称：HSC_phylodynamics
文件大小：25.24MB
文件格式：ZIP
更新时间：2024-05-30 06:22:33
R
该存储库包含代码和必要的文件，以配合文章“从自发的体细胞突变推断出的正常人血的种群动态”。 如果不清楚或发现错误，请发送电子邮件至 。
【文件预览】：
HSC_phylodynamics-master
----.DS_Store(8KB)
----abc_code_and_files()
--------error_rate_from_controls_zero_set_to_one_in_tenthousand.txt(56KB)
--------.DS_Store(6KB)
--------simulate_haematopoiesis.R(19KB)
--------Deps_per_subsample_for_sims.txt(95KB)
--------uids.txt(71.38MB)
--------essential_input.txt(35KB)
----filtering_subs()
--------.DS_Store(6KB)
--------filter_mpileup_subs_pre_shearwater.R(6KB)
--------Clonal_colonies.txt(915B)
----README.md(249B)
----targeted_analysis_code_and_files()
--------posterior_vafs_combined_model_with_node_effects_300000_with_CI.txt(2.93MB)
--------.DS_Store(6KB)
--------hspc_tree.tree(2KB)
--------branch_timings.txt(205KB)
--------model_with_node_effects_output_corrected_and_logged_cutoff_minus8.5_topcutpt02_300000its.txt(631KB)
--------model_input.txt(650KB)
--------targeted_annotated_by_lineage_lci_cutoff_high_low_gran_vaf_only_jungrans_no_mtrs_set_to_zero.txt(496KB)
--------targeted_analysis_mcmcglmm.R(14KB)
--------MCMC all samples 300000.pdf(46KB)
--------june_grans_stranded_pileup_with_mut_timing.txt(1.42MB)
----assign_mutations_to_tree_code_and_files()
--------Shearwater_calls_FDR0.95_all_muts.txt(37.26MB)
--------assign_mutations_to_tree.R(4KB)
--------Shared_mutations.txt(2.84MB)
--------consensus_tree.tree(1KB)
----relationships_between_cell_types_code_and_files()
--------.DS_Store(6KB)
--------hspc_tree.tree(2KB)
--------AMOVA_different_comparisons.pdf(8KB)
--------Key_for_colouring_tip_labels.txt(8KB)
--------relationship_between_cell_types.R(4KB)
----Tree_building_methods()
--------.DS_Store(6KB)
--------Indels()
--------STRs()
--------Substitutions()