文件名称：matlab人头检测的代码-exomePeak:基于亲和力的shot弹枪测序方法分析RNA转录组测序数据
文件大小：2.09MB
文件格式：ZIP
更新时间：2024-06-12 22:44:45
系统开源
matlab人头检测的代码ExomePeak简介 作者：贾萌，博士，2019-05-03 安装 要从Github安装exomePeak ，请使用以下代码： if ( ! requireNamespace( " BiocManager " , quietly = TRUE )) install.packages( " BiocManager " ) BiocManager :: install(c( " SummarizedExperiment " , " cqn " , " Rsamtools " , " GenomicAlignments " , " GenomicRanges " , " GenomicFeatures " , " DESeq2 " , " ggplot2 " , " mclust " , " genefilter " , " BSgenome " , " BiocParallel " , " IRanges " , " S4Vectors " , " quantreg " , " reshape2 " , " rtracklayer " , " apeglm "
【文件预览】：
exomePeak-master
----.DS_Store(10KB)
----.gitattributes(66B)
----vignettes()
--------.DS_Store(6KB)
--------exomePeak-Overview.Rmd(11KB)
----NAMESPACE(173B)
----DESCRIPTION(2KB)
----inst()
--------.DS_Store(6KB)
--------CITATION(2KB)
--------extdata()
----R()
--------exomepeak_notification.R(4KB)
--------RMT.R(11KB)
--------exomepeak.R(7KB)
--------bltest.r(4KB)
--------bed2transcriptdb.R(1KB)
--------get.peak.reads.count.R(743B)
--------get.bam.read.length.R(368B)
--------report.peak.based.on.result.R(3KB)
--------remove.local.anomalities.R(618B)
--------get.sample.id.R(1KB)
--------get.peak.from.loci.R(889B)
--------get.bam.chrs.R(336B)
--------ctest.R(944B)
--------get.check.points.R(316B)
--------get.check.points.reads.count.R(2KB)
--------get.gene.anno.R(990B)
--------read.gtf.R(2KB)
--------get.table.peak.result.R(2KB)
--------diff.consistency.evaluate.R(2KB)
--------get.reads.count.R(838B)
--------divide.anno.into.batches.R(3KB)
--------peak.calling.module.R(1KB)
--------report.diff.peak.based.on.result.R(3KB)
--------merge.and.compare.two.different.conditions.R(3KB)
--------rhtest.R(3KB)
--------get.block.from.rna.peak.R(1KB)
----.Rbuildignore(28B)
----README.md(17KB)
----NEWS(676B)
----man()
--------RMT.Rd(6KB)
--------exomePeak-package.Rd(2KB)
--------exomepeak.Rd(13KB)
--------bltest.Rd(4KB)
--------rhtest.Rd(4KB)
--------ctest.Rd(2KB)
----.gitignore(65B)
----README.Rmd(11KB)