I have a bash script that sets an environment variable an runs a command
我有一个bash脚本,用于设置环境变量并运行命令
LD_LIBRARY_PATH=my_path
sqsub -np $1 /homedir/anotherdir/executable
Now I want to use python instead of bash, because I want to compute some of the arguments that I am passing to the command.
现在我想使用python而不是bash,因为我想计算一些我传递给命令的参数。
I have tried
我努力了
putenv("LD_LIBRARY_PATH", "my_path")
and
和
call("export LD_LIBRARY_PATH=my_path")
followed by
其次是
call("sqsub -np " + var1 + "/homedir/anotherdir/executable")
but always the program gives up because LD_LIBRARY_PATH is not set.
但是程序总是放弃,因为没有设置LD_LIBRARY_PATH。
How can I fix this?
我怎样才能解决这个问题?
Thanks for help!
感谢帮助!
(if I export LD_LIBRARY_PATH before calling the python script everything works, but I would like python to determine the path and set the environment variable to the correct value)
(如果我在调用python脚本之前导出LD_LIBRARY_PATH一切正常,但我希望python确定路径并将环境变量设置为正确的值)
3 个解决方案
#1
35
bash:
庆典:
LD_LIBRARY_PATH=my_path
sqsub -np $1 /path/to/executable
Similar, in Python:
类似,在Python中:
import os
import subprocess
import sys
os.environ['LD_LIBRARY_PATH'] = "my_path" # visible in this process + all children
subprocess.check_call(['sqsub', '-np', sys.argv[1], '/path/to/executable'],
env=dict(os.environ, SQSUB_VAR="visible in this subprocess"))
#2
8
You can add elements to your environment by using
您可以使用添加元素到您的环境
os.environ['LD_LIBRARY_PATH'] = 'my_path'
and run subprocesses in a shell (that uses your os.environ
) by using
并使用在shell(使用您的os.environ)中运行子进程
subprocess.call('sqsub -np ' + var1 + '/homedir/anotherdir/executable', shell=True)
#3
-1
Compact solution (provided you don't need other environment variables):
紧凑型解决方案(假设您不需要其他环境变量):
call('sqsub -np {} /homedir/anotherdir/executable'.format(var1).split(),
env=dict(LD_LIBRARY_PATH=my_path))
Using the env command line tool:
使用env命令行工具:
call('env LD_LIBRARY_PATH=my_path sqsub -np {} /homedir/anotherdir/executable'.format(var1).split())
#1
35
bash:
庆典:
LD_LIBRARY_PATH=my_path
sqsub -np $1 /path/to/executable
Similar, in Python:
类似,在Python中:
import os
import subprocess
import sys
os.environ['LD_LIBRARY_PATH'] = "my_path" # visible in this process + all children
subprocess.check_call(['sqsub', '-np', sys.argv[1], '/path/to/executable'],
env=dict(os.environ, SQSUB_VAR="visible in this subprocess"))
#2
8
You can add elements to your environment by using
您可以使用添加元素到您的环境
os.environ['LD_LIBRARY_PATH'] = 'my_path'
and run subprocesses in a shell (that uses your os.environ
) by using
并使用在shell(使用您的os.environ)中运行子进程
subprocess.call('sqsub -np ' + var1 + '/homedir/anotherdir/executable', shell=True)
#3
-1
Compact solution (provided you don't need other environment variables):
紧凑型解决方案(假设您不需要其他环境变量):
call('sqsub -np {} /homedir/anotherdir/executable'.format(var1).split(),
env=dict(LD_LIBRARY_PATH=my_path))
Using the env command line tool:
使用env命令行工具:
call('env LD_LIBRARY_PATH=my_path sqsub -np {} /homedir/anotherdir/executable'.format(var1).split())