Hi I need to change these filenames in a folder:
嗨,我需要在文件夹中更改这些文件名:
dingo__AAA311P02_2845__L7_ACTTGA_L007_R1_001.fastq.gz
lala_bros__AAA000M11_3289__L2_ACTGAT_L002_R2_001.fastq.gz
nice__AAA827M10_2860__L7_ACTGAT_L007_R2_001.fastq.gz
I need to retain the AAA****** (eg. AAA255P02) and also keep the R1 or R2 and the extension fastq.gz
我需要保留AAA ******(例如AAA255P02)并保留R1或R2和扩展名fastq.gz
So ideally i would like to get these:AAA311P02_R1.fastq.gz AAA000M11_R2.fastq.gz AAA827M10_R2.fastq.gz
理想情况下,我想得到这些:AAA311P02_R1.fastq.gz AAA000M11_R2.fastq.gz AAA827M10_R2.fastq.gz
I tried using rename 's/^.*\(AAA[1-9][1-9][1-9][A-Z][1-9][1-9]\).*$/\$1/g' *.fastq.gz
我尝试使用重命名的/^.* \(AAA [1-9] [1-9] [1-9] [AZ] [1-9] [1-9] \)。* $ / \ $ 1 / g'* .fastq.gz
1 个解决方案
#1
\(...\) searches for parenthesis but does not capture its contents.
\(... \)搜索括号但不捕获其内容。
I see three blocks to get captured, so I'd propose the following:
我看到有三个块被捕获,所以我建议如下:
rename 's/^.*(AAA.{6}).*(_R.).*(\.fastq.gz)/$1$2$3/' *.fastq.gz
1st block: AAA followed by six characters.
第一块:AAA后跟六个字符。
2nd block: _R followed by a single character.
第二块:_R后跟一个字符。
3rd block: the extension .fastq.gz
第3块:扩展名.fastq.gz
#1
\(...\) searches for parenthesis but does not capture its contents.
\(... \)搜索括号但不捕获其内容。
I see three blocks to get captured, so I'd propose the following:
我看到有三个块被捕获,所以我建议如下:
rename 's/^.*(AAA.{6}).*(_R.).*(\.fastq.gz)/$1$2$3/' *.fastq.gz
1st block: AAA followed by six characters.
第一块:AAA后跟六个字符。
2nd block: _R followed by a single character.
第二块:_R后跟一个字符。
3rd block: the extension .fastq.gz
第3块:扩展名.fastq.gz