I am trying to install biopython 1.65 in debian. I have the dependencies Numpy and Scipy. When I try to build it, it fails:
我正在尝试在debian中安装biopython 1.65。我有依赖项Numpy和Scipy。当我尝试构建它时，它失败了:
python setup.py build
python的设置。py构建
running build running build_py running build_ext building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-2.7/Bio/cpairwise2module.o Bio/cpairwise2module.c:12:20: fatal error: Python.h: No such file or directory #include "Python.h" ^ compilation terminated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
运行构建运行build_py运行build_ext构建的Bio。cpairwise2' extension x86_64 linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall - wstrict -prototype -fno-strict -D_FORTIFY_SOURCE=2 -g -fstack- protecack -strong -Wformat -Werror=format-security -fPIC -I -fPIC - s2.7 - sod -包括/usr。c - o构建/ temp.linux - x86_64 2.7 /生物/ cpairwise2module。o生物/ cpairwise2module。c:12:20:致命错误:Python。h:没有这样的文件或目录#包含“Python”。h”^编译终止。错误:命令'x86_64 linux-gnu-gcc'在退出状态1时失败
Somebody know how I can solve it?
有人知道我怎么解决吗?
Many thanks
非常感谢
2 个解决方案
#1
1
#include "Python.h"
tells the preprocessor to search a local file, and if it doesn't exists there, the preprocessor changes it to
告诉预处理器搜索一个本地文件，如果它不存在，则预处理器将其更改为。
#include <Python.h>
which should be located in /usr/include/python2.7 (which is passed as argument to gcc). Many Linux distros don't have header files installed by default, so you have to install it manually.
它应该位于/usr/include/python2.7中(作为参数传递给gcc)。许多Linux发行版没有默认安装头文件，所以您必须手动安装它。
Header files for python2.7 are shipped with package libpython2.7-dev
python2.7的头文件随包libpython2.7-dev一起提供
You can find which package to install by searching it with aptitude, synaptic or apt-cache search adding dev after the package name (in that case python dev); the name could be different than the installed one.
您可以通过使用aptitude、synaptic或apt-cache搜索在包名之后添加dev来查找要安装的包(在这种情况下是python dev);名称可能与已安装的名称不同。
#2
1
Had the same issue on Fedora, what helped was:
Fedora也有同样的问题，有帮助的是:
yum install python-devel
#1
1
#include "Python.h"
tells the preprocessor to search a local file, and if it doesn't exists there, the preprocessor changes it to
告诉预处理器搜索一个本地文件，如果它不存在，则预处理器将其更改为。
#include <Python.h>
which should be located in /usr/include/python2.7 (which is passed as argument to gcc). Many Linux distros don't have header files installed by default, so you have to install it manually.
它应该位于/usr/include/python2.7中(作为参数传递给gcc)。许多Linux发行版没有默认安装头文件，所以您必须手动安装它。
Header files for python2.7 are shipped with package libpython2.7-dev
python2.7的头文件随包libpython2.7-dev一起提供
You can find which package to install by searching it with aptitude, synaptic or apt-cache search adding dev after the package name (in that case python dev); the name could be different than the installed one.
您可以通过使用aptitude、synaptic或apt-cache搜索在包名之后添加dev来查找要安装的包(在这种情况下是python dev);名称可能与已安装的名称不同。
#2
1
Had the same issue on Fedora, what helped was:
Fedora也有同样的问题，有帮助的是:
yum install python-devel