文件名称：Drosophila_Immunity_TimeSeries
文件大小：70.85MB
文件格式：ZIP
更新时间：2024-03-29 01:04:03
R
果蝇_免疫_时间系列 原始数据（fastq.gz文件）可以从BioProject登录号PRJNA641552的“序列读取存档（SRA）”中下载，“果蝇先天性免疫应答的密集时程基因表达谱”
【文件预览】：
Drosophila_Immunity_TimeSeries-main
----README.md(253B)
----Archive()
--------README.md(619B)
--------JTK cycle analysis.zip(6.58MB)
--------Hierarchical clustering.zip(4.66MB)
--------misc.zip(9.32MB)
--------ACF clustering.zip(13.26MB)
--------data processing.zip(1.27MB)
--------GSA pathway analysis.zip(10.07MB)
--------GC network analysis.zip(7.81MB)
----scripts()
--------plotting_figure2.R(11KB)
--------data_processing.R(2KB)
--------plotting_figure1.R(3KB)
--------plotting_figure3.R(5KB)
--------differential_expression_analysis.R(18KB)
----plots()
--------Figure_1B_PCAplot.pdf(8KB)
--------Figure_3A_core91_heatmap.pdf(13KB)
--------Figure_2C_smoothing_long_AttA-DptB.pdf(14KB)
--------Figure_2B_smoothing_short_Gale-Galk.pdf(15KB)
--------Figure_3B_genedistribution.pdf(5KB)
--------Figure_1A_timepoints.pdf(6KB)
----results()
--------adj.pvalues_short.filtered_pvalue-cut_0.05_logFC-cut_2_tp-cut_1_spline_3.csv(65KB)
--------top_genes_limma-voom_short.filtered_A_spline_3_TMM_ALL_SMOOTHED.csv(3.66MB)
--------top_genes_limma-voom_short.filtered_B_spline_3_TMM_1to7_ALL_SMOOTHED.csv(1.6MB)
--------top_genes_limma-voom_short.filtered_B_spline_3_TMM_0.05.csv(117KB)
--------adj.pvalues_short.filtered_pvalue-cut_0.05_logFC-cut_1_tp-cut_1_spline_3.csv(220KB)
--------adj.pvalues_short.filtered_ALL_spline_3.csv(3.69MB)
--------top_genes_limma-voom_short.filtered_A_spline_3_TMM_0.05.csv(161KB)
--------log_fold_change_short.filtered_pvalue-cut_0.05_logFC-cut_2_tp-cut_1_spline_3.csv(23KB)
--------log_fold_change_short.filtered_pvalue-cut_0.01_logFC-cut_2_tp-cut_2_spline_3.csv(11KB)
--------adj.pvalues_short.filtered_pvalue-cut_0.01_logFC-cut_2_tp-cut_2_spline_3.csv(28KB)
--------top_genes_limma-voom_short.filtered_B_spline_3_TMM_ALL_SMOOTHED.csv(3.66MB)
--------log_fold_change_short.filtered_pvalue-cut_0.05_logFC-cut_1_tp-cut_1_spline_3.csv(73KB)
--------top_genes_limma-voom_short.filtered_A_spline_3_TMM_0.05_1to7.csv(18KB)
--------log_fold_change_short.filtered_ALL_spline_3.csv(3.79MB)
--------top_genes_limma-voom_short.filtered_B_spline_3_TMM_0.05_1to7.csv(20KB)
--------gene_lists()
--------top_genes_limma-voom_short.filtered_A_spline_3_TMM_1to7_ALL_SMOOTHED.csv(1.6MB)
----data()
--------List_of_immune_genes_updated.csv(35KB)
--------normalized_counts.csv(10.59MB)
--------raw_counts.csv(2.74MB)
--------metadata_table.csv(2KB)
--------normalized_counts_log_filt.csv(8.53MB)